This function computes a summary helping you to picture assemblages. For
this function to work, there must be no NA in your asb_sp_w data frame.
Value
A list with:
- asb_sp_w_occ
a matrix with species occurrences in each assemblage.
- sp_tot_w
a vector gathering species biomass/abundance per species.
- asb_tot_w
a vector gathering total abundance/biomass per assemblage.
- asb_sp_richn
a vector gathering species richness per assemblage.
- asb_sp_nm
a list gathering the names of species of each assemblage.
Examples
# Load Assemblages x Species Matrix
data('baskets_fruits_weights', package = 'mFD')
# Summarize Assemblages Data
mFD::asb.sp.summary(asb_sp_w = baskets_fruits_weights)
#> $asb_sp_occ
#> apple apricot banana currant blackberry blueberry cherry grape
#> basket_1 1 0 1 0 0 0 1 0
#> basket_2 1 0 1 0 0 0 1 0
#> basket_3 1 0 1 0 0 0 1 0
#> basket_4 1 0 0 0 0 0 0 0
#> basket_5 1 0 0 0 0 0 0 0
#> basket_6 1 0 1 0 0 0 0 0
#> basket_7 1 0 1 0 0 0 0 0
#> basket_8 0 0 0 1 1 1 1 1
#> basket_9 0 0 0 1 1 1 1 1
#> basket_10 1 1 0 0 0 0 0 1
#> grapefruit kiwifruit lemon lime litchi mango melon orange
#> basket_1 0 0 1 0 0 0 1 0
#> basket_2 0 0 1 0 0 0 1 0
#> basket_3 0 0 1 0 0 0 1 0
#> basket_4 0 1 1 0 0 0 0 1
#> basket_5 0 1 1 0 0 0 0 1
#> basket_6 0 0 0 1 1 1 0 1
#> basket_7 0 0 0 1 1 1 0 1
#> basket_8 0 0 1 0 0 0 0 0
#> basket_9 0 0 1 0 0 0 0 0
#> basket_10 1 0 0 0 0 0 1 0
#> passion_fruit peach pear pineapple plum raspberry strawberry
#> basket_1 1 0 1 0 0 0 1
#> basket_2 1 0 1 0 0 0 1
#> basket_3 1 0 1 0 0 0 1
#> basket_4 0 1 1 0 1 0 0
#> basket_5 0 1 1 0 1 0 0
#> basket_6 0 0 0 1 0 0 0
#> basket_7 0 0 0 1 0 0 0
#> basket_8 0 0 0 0 0 1 1
#> basket_9 0 0 0 0 0 1 1
#> basket_10 0 0 1 0 1 0 1
#> tangerine water_melon
#> basket_1 0 0
#> basket_2 0 0
#> basket_3 0 0
#> basket_4 1 0
#> basket_5 1 0
#> basket_6 0 1
#> basket_7 0 1
#> basket_8 0 0
#> basket_9 0 0
#> basket_10 0 0
#>
#> $sp_tot_w
#> apple apricot banana currant blackberry
#> 1850 200 1400 300 400
#> blueberry cherry grape grapefruit kiwifruit
#> 300 950 900 300 400
#> lemon lime litchi mango melon
#> 1200 400 300 700 1500
#> orange passion_fruit peach pear pineapple
#> 900 300 600 1900 1000
#> plum raspberry strawberry tangerine water_melon
#> 550 900 1650 300 800
#>
#> $asb_tot_w
#> basket_1 basket_2 basket_3 basket_4 basket_5 basket_6 basket_7 basket_8
#> 2000 2000 2000 2000 2000 2000 2000 2000
#> basket_9 basket_10
#> 2000 2000
#>
#> $asb_sp_richn
#> basket_1 basket_2 basket_3 basket_4 basket_5 basket_6 basket_7 basket_8
#> 8 8 8 8 8 8 8 8
#> basket_9 basket_10
#> 8 8
#>
#> $asb_sp_nm
#> $asb_sp_nm$basket_1
#> apple banana cherry lemon melon
#> 1 1 1 1 1
#> passion_fruit pear strawberry
#> 1 1 1
#>
#> $asb_sp_nm$basket_2
#> apple banana cherry lemon melon
#> 1 1 1 1 1
#> passion_fruit pear strawberry
#> 1 1 1
#>
#> $asb_sp_nm$basket_3
#> apple banana cherry lemon melon
#> 1 1 1 1 1
#> passion_fruit pear strawberry
#> 1 1 1
#>
#> $asb_sp_nm$basket_4
#> apple kiwifruit lemon orange peach pear plum tangerine
#> 1 1 1 1 1 1 1 1
#>
#> $asb_sp_nm$basket_5
#> apple kiwifruit lemon orange peach pear plum tangerine
#> 1 1 1 1 1 1 1 1
#>
#> $asb_sp_nm$basket_6
#> apple banana lime litchi mango orange
#> 1 1 1 1 1 1
#> pineapple water_melon
#> 1 1
#>
#> $asb_sp_nm$basket_7
#> apple banana lime litchi mango orange
#> 1 1 1 1 1 1
#> pineapple water_melon
#> 1 1
#>
#> $asb_sp_nm$basket_8
#> currant blackberry blueberry cherry grape lemon raspberry
#> 1 1 1 1 1 1 1
#> strawberry
#> 1
#>
#> $asb_sp_nm$basket_9
#> currant blackberry blueberry cherry grape lemon raspberry
#> 1 1 1 1 1 1 1
#> strawberry
#> 1
#>
#> $asb_sp_nm$basket_10
#> apple apricot grape grapefruit melon pear plum
#> 1 1 1 1 1 1 1
#> strawberry
#> 1
#>
#>